Ford 6.0L Power Stroke Diesel :: Running Rough When Cold / No Smoke / Sticking Throttle

So,I am working on a 2003 F250 6.0 manual trans. all stock. 204,000 miles. I got it not running. Charged the batteries and pulled the 14 codes accumulated by the last people trying to work on it.There were cyl 1,2,5,6,7,8 contrib codes, P0403 and P0405 egr(the egr was unplugged when I got it), P0341 Cam pos., P0500 VSS, P0562 voltage low, P0683 glow plugs, P1378 fuel inj. ctrl., and a P1000. It is on it's second used car lot, no one can fix it and I don't know what they have done.

Cleared the codes, removed, cleaned, replaced the EGR, installed new batteries, and went over the wiring harnesses. I am down to the P1000, an occasional P0405, and random cyl 3, sometimes 2 contrib codes. If I warm it up and clear the codes, I don't get any contrib codes.

I hooked up the Scan Gauge and the ICP is 554-up cranking, starts without any long crank, runs at 644 at an idle, revs up and reads 2404 max. This is sitting in the garage.

The IPR was 14.8 to start off with, running mostly between 29.7 and 38. revving it up. The FMD is steady 48.0. I have run the buzz test both warm and cold- sounds good, no faults found. Have run the KOER and KOEO demand tests, no faults. There is no smoking. I have changed the fuel filters. I have not located an adapter to hook up my fuel pressure gauge.

As it is right now, it starts reasonably well (it's in the 20's here at night). It runs rough until the temp gauge gets to the top of the little thermometer symbol, then it runs better. The turbo sounds like it's operating as expected, nothing weird. Cold it has a rough idle and poor throttle response. Warm it idles well, with an intermittent light "shudder" .

The weirdest thing I find is the fuel pedal, when I rev it up warm, it won't come back to idle right away, takes 10-20 seconds. It also does this shifting. It does not rev up on it's own, and it will stick at any RPM. I did not find a value for TPS on my datastream on my scan tool (Auto Xray Tech scan 7000). When I let off the throttle the IPR and HPOP pressure drop. The truck was hardly driven for the last 7 years (6000 miles).

I have added some Archoil 9100, that smoothed out the warm operation even more, it drives perfectly down the road (300 miles the other day). I sent the FICM (the guys on the other forum insisted my problem sounds like the logic side of the FICM) to Ed, got it back, no change. I took a peek at the IPR, it is shiny and clean, the connector is tight and free of oil.

I removed and inspected the throttle pedal, it's seems clean and operational. It only has the cylinder contrib codes cold, and it is usually only one cylinder, that cylinder changes, first it was 8 a couple of times, then 3, then 2, now 7. Which injector could be bad and there is no smoke.

I guess the biggie here is to get the throttle to stop sticking. It runs better everyday, but the sticking could be dangerous. The rough running cold cold just be this engines normal. The light shudder at idle goes in 3-5 second increments- light shudder-smooth-light shudder-smooth...